Save Classification Results and Generate Plots

Writes MCMC results to CSV files and generates descriptive and result-based plots (Diversity, MOI, and Posterior Histograms).

Usage

save_results(
  summary_results,
  imported_data = NULL,
  output_folder = NULL,
  verbose = TRUE,
  plots = TRUE
)

Arguments

summary_results

List from summarise_results.

imported_data

List from import_data. When NULL, data-dependent plots (diversity, MOI) are skipped.

output_folder

Path to save files. NULL prints plots to the R plot window and skips CSV saving.

verbose

Logical.

plots

Logical. If FALSE, no plots are generated, shown or saved; only the CSV files are written. Defaults to TRUE.

Value

A named character vector of paths to the files that were written, or invisible(NULL) when output_folder is NULL.

See also

summarise_results, MalReBay

Examples

if (FALSE) { # \dontrun{
imported <- import_data()
results  <- classify_infections(imported)
summary  <- summarise_results(results, imported)
save_results(summary, imported, output_folder = "my_results")
} # }