Defines entomology setting — defineEntomology • openMalariaUtilities

Defines entomology setting

Usage

defineEntomology(
  baseList,
  seasonalityParameters,
  mosquitoParameters,
  mode = "dynamic",
  name = "Namawala",
  scaledAnnualEIR = NULL,
  verbose = FALSE,
  append = TRUE
)

define_entomology(
  baseList,
  seasonalityParameters,
  mosquitoParameters,
  mode = "dynamic",
  name = "Namawala",
  scaledAnnualEIR = NULL,
  verbose = FALSE,
  append = TRUE
)

Arguments

baseList: List with experiment data.
seasonalityParameters: Seasonality parameterization.
mosquitoParameters: Mosquito bionomics parameterization list of different mosquito species as obtained from AnophelesModel package function get_OM_ento_snippet
mode: Dynamic or static
name: Name of your setting
scaledAnnualEIR: If not NULL, annualEIR will be rescaled by numeric
verbose: If TRUE, print detailed output.
append: If TRUE, then append to existing baseList, otherwise overwrite

Examples

 mosquitoParameters=list("Anopheles gambiae"=list(
  mosqRestDuration=list(value="2"),
  extrinsicIncubationPeriod=list(value="10"),
  mosqLaidEggsSameDayProportion=list(value="0.589"),
  mosqSeekingDuration=list(value="3"),
  mosqSurvivalFeedingCycleProbability=list(value="0.75"),
  mosqProbBiting=list(mean="0.95",
                      variance="0"),
  mosqProbFindRestSite=list(mean="0.95",
                            variance="0"),
  mosqProbResting=list(mean="0.99",
                       variance="0"),
   mosqProbOvipositing=list(mean="0.88"),
  mosqHumanBloodIndex=list(mean="0.6243")))