Function to write the case management deployments

Usage

define_changeHS_compat(
  baseList,
  access = "Access",
  coverage = NULL,
  y1 = 2000,
  y2 = 2015,
  use_at_symbol = TRUE,
  pSelfTreatUncomplicated = 0.01821375,
  futSevere = NULL,
  pSeekOfficialCareSevere = 0.48,
  SIMSTART = "1918-01-01",
  every = 1,
  interval = "year",
  m1 = 1,
  m2 = 1,
  init.act = 1,
  init.qn = 1,
  init.self = 1,
  comp.act = 1,
  comp.qn = 1,
  comp.self = 1
)

Arguments

baseList: List with experiment data.
access: Name of coverage value (i.e. "Access")
coverage: Name of future intervention for change in HS (i.e. "@futCM@")
y1: Year of the first date (surveys starting from year y1)
y2: Year of the end date (surveys continuing until year y2)
use_at_symbol: If TRUE, variable will be replaced with setting specific values
pSelfTreatUncomplicated: Proportion of uncomplicated episodes treated at home
futSevere: Variable for different values of 'pseekOfficialCareSevere'
pSeekOfficialCareSevere: Proportion of severe episodes that seek care at the formal sector
SIMSTART: Start of the simulations (equal to ORIGIN!)
every: Interval size
interval: Interval size (days, weeks, )
m1: Month of the first date
m2: Month of the end date
init.act: Initial ACT
init.qn: Initial Quinine
init.self: Initial self treatment
comp.act: See OpenMalaria
comp.qn: See OpenMalaria
comp.self: See OpenMalaria