Write the underlying transmission dynamics

Write the underlying transmission dynamics

Usage

write_end_compat(
  baseList,
  seed = 4,
  modelname = "base",
  selectedOptions = NULL,
  comorb = 0.0968,
  critage = 0.117383,
  logodds = 0.736202,
  healthSystemMemory = "6t",
  ...
)

Arguments

baseList

List with experiment data.

seed

Number of replicates per scenario.

modelname

Select model (default= base 'R0000'). Other options currently not available.

selectedOptions

Model options to activate. Can be any combination of c("COMORB_HET", "VECTOR_SIMPLE_MPD_MODEL", "LOGNORMAL_MASS_ACTION", "MAX_DENS_CORRECTION", "INNATE_MAX_DENS", "INDIRECT_MORTALITY_FIX").

comorb

Comorbidity.

critage

Critical age.

logodds

Log odds terms.

healthSystemMemory

healthSystemMemory (see OpenMalaria).

...

deprecated