Schema 2 documentation

Generated from: scenario_2.xsd.

Key:

  abc           required (one)
[ def ]         optional (zero or one)
( ghi )*        any number (zero or more)
( jkl )+        at least one
( mno ){2,inf}  two or more occurrences

scenario

→ scenario

<scenario
    schemaVersion=int
    analysisNo=int
    maximumAgeYrs=double
    name=string
    popSize=int
    simulationDuration=int
    modelVersion=int
    wuID=int
    assimMode=("0" or "1")
    mode=("1" or "2" or "3" or "4")
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:noNamespaceSchemaLocation="scenario_2.xsd"
  >
IN THIS ORDER:
|   <demography ... /> 
|   <monitoring ... /> 
|   <interventions ... /> 
| [ <caseManagements ... /> ]
|   <healthSystem ... /> 
|   <entoData ... /> 
|   <parameters ... /> 
</scenario>

• demography
• monitoring
• interventions
• caseManagements
• healthSystem
• entoData
• parameters

Documentation (element)

Units: List of elements

Description of scenario

Attributes

schemaVersion

schemaVersion=int

Version of xml schema. If not equal to the current version an error is thrown. Use SchemaTranslator to update xml files.

analysisNo

analysisNo=int

Units: Number Min: 1 Max: 100000000

Unique identifier of scenario

maximumAgeYrs

maximumAgeYrs=double

Units: Number Min: 0 Max: 100

Maximum age of simulated humans

name

name=string

Units: string

Name of intervention

popSize

popSize=int

Units: Count Min: 1 Max: 100000

Population size

simulationDuration

simulationDuration=int

Units: Time steps Min: 1 Max: 36500

Duration of main simulation

modelVersion

modelVersion=int

Units: Code Min: 0 Max: 100000000

Model Version

wuID

wuID=int

Units: Number Min: 1 Max: 100000000

Work unit ID. Only used to validate checkpointing, to prevent checkpoint cheats.

assimMode

assimMode=("0" or "1")

Units: Code

Assimilator mode. Defines output of simulator as either complete (columns: time,agegroup,measure,value) or minimal (single column: value)

mode

mode=("1" or "2" or "3" or "4")

Units: Code

Simulation mode

demography

→ scenario → demography

<demography
    name=string
  [ growthRate=double ]
  >
IN THIS ORDER:
|   <ageGroup ... /> 
</demography>

• ageGroup

Documentation (element)

Units: List of elements

Description of demography

Documentation (type)

Units: List of elements

Description of demography

Attributes

name

name=string

Units: string

Name of demography data

growthRate

growthRate=double

Units: Number Min: 0 Max: 0

Growth rate of human population.

ageGroup

→ scenario → demography → ageGroup

<ageGroup
    lowerbound=double
  >
IN THIS ORDER:
| ( <group ... /> )+
</ageGroup>

• group

Documentation (element)

Units: List of elements

List of age groups included in demography

Documentation (type)

Units: List of elements

List of age groups included in demography or surveys

Attributes

lowerbound

lowerbound=double

Units: Years Min: 0 Max: 100

Lower bound of age group

group

→ scenario → demography → ageGroup → group

<group
    poppercent=double
    upperbound=double
  />

Attributes

poppercent

poppercent=double

upperbound

upperbound=double

monitoring

→ scenario → monitoring

<monitoring
    name=string
  >
IN THIS ORDER:
|   <surveys ... /> 
|   <ageGroup ... /> 
</monitoring>

• surveys
• ageGroup

Documentation (element)

Units: List of elements

Description of surveys

Documentation (type)

Units: List of elements

Description of surveys

Attributes

name

name=string

Units: string

Name of monitoring data

surveys

→ scenario → monitoring → surveys

<surveys
    detectionLimit=double
    summaryOption=int
  >
IN THIS ORDER:
|   <surveyTime ... /> 
</surveys>

• surveyTime

Documentation (element)

Units: List of elements

List of survey times

Attributes

detectionLimit

detectionLimit=double

Units: parasites/micolitre Min: 0 Max: 1000

Detection limit for parasitemia

summaryOption

summaryOption=int

Units: Code

Requested output variables

surveyTime

→ scenario → monitoring → surveys → surveyTime

<surveyTime>
    int
</surveyTime>

Documentation (element)

Units: Number Min: 0

Survey time

ageGroup

→ scenario → monitoring → ageGroup

<ageGroup
    lowerbound=double
  >
IN THIS ORDER:
| ( <group ... /> )+
</ageGroup>

• group

Documentation (element)

Units: List of elements

List of age groups included in demography or surveys

Documentation (type)

Units: List of elements

List of age groups included in surveys

Attributes

lowerbound

lowerbound=double

Units: Years Min: 0 Max: 100

Lower bound of age group

group

→ scenario → monitoring → ageGroup → group

<group
    upperbound=double
  />

Attributes

upperbound

upperbound=double

interventions

→ scenario → interventions

<interventions
    name=string
  >
IN THIS ORDER:
| ( <vaccineDescription ... /> ){0,3}
| [ <iptiDescription ... /> ]
| [ <ITNDescription ... /> ]
| [ <continuous ... /> ]
| [ <timed ... /> ]
</interventions>

• vaccineDescription
• iptiDescription
• ITNDescription
• continuous
• timed

Documentation (element)

Units: List of elements

List of interventions

Documentation (type)

Units: List of elements

List of interventions

Attributes

name

name=string

Units: string

Name of age specific intervention

vaccineDescription

→ scenario → interventions → vaccineDescription

<vaccineDescription
    vaccineType=int
  >
IN THIS ORDER:
|   <halfLifeYrs ... /> 
|   <efficacyB ... /> 
| ( <initialEfficacy ... /> )+
</vaccineDescription>

• halfLifeYrs
• efficacyB
• initialEfficacy

Attributes

vaccineType

vaccineType=int

Units: Code

Type of vaccine

halfLifeYrs

→ scenario → interventions → vaccineDescription → halfLifeYrs

<halfLifeYrs
    value=double
  />

Documentation (element)

Units: Years Min: 0 Max: 100

Half life of drug effect

Attributes

value

value=double

TODO

efficacyB

→ scenario → interventions → vaccineDescription → efficacyB

<efficacyB
    value=double
  />

Documentation (element)

Units: Positive real Min: 0.001 Max: 1.00E+06

Measure of variation in vaccine efficacy

Attributes

value

value=double

TODO

initialEfficacy

→ scenario → interventions → vaccineDescription → initialEfficacy

<initialEfficacy
    value=double
  />

Attributes

value

value=double

TODO

iptiDescription

→ scenario → interventions → iptiDescription

<iptiDescription
    iptiEffect=int
  >
IN THIS ORDER:
| ( <infGenotype ... /> )+
</iptiDescription>

• infGenotype

Attributes

iptiEffect

iptiEffect=int

infGenotype

→ scenario → interventions → iptiDescription → infGenotype

<infGenotype
    name=string
    freq=double
    ACR=double
    proph=int
    tolPeriod=int
    atten=int
  />

Attributes

name

name=string

Units: string

Name of age specific intervention

freq

freq=double

ACR

ACR=double

proph

proph=int

tolPeriod

tolPeriod=int

atten

atten=int

ITNDescription

→ scenario → interventions → ITNDescription

<ITNDescription>
IN THIS ORDER:
|   <halfLifeYrs ... /> 
|   <pu0 ... /> 
|   <pu1 ... /> 
|   <sporogonyGonotrophy ... /> 
</ITNDescription>

• halfLifeYrs
• pu0
• pu1
• sporogonyGonotrophy

halfLifeYrs

→ scenario → interventions → ITNDescription → halfLifeYrs

<halfLifeYrs
    value=double
  />

Documentation (element)

Units: Years Min: 0 Max: 100

Half life of drug effect

Attributes

value

value=double

TODO

pu0

→ scenario → interventions → ITNDescription → pu0

<pu0
    value=double
  />

Documentation (element)

Units: To be replaced

To be replaced

Attributes

value

value=double

TODO

pu1

→ scenario → interventions → ITNDescription → pu1

<pu1
    value=double
  />

Documentation (element)

Units: To be replaced

To be replaced

Attributes

value

value=double

TODO

sporogonyGonotrophy

→ scenario → interventions → ITNDescription → sporogonyGonotrophy

<sporogonyGonotrophy
    value=double
  />

Documentation (element)

Units: To be replaced

To be replaced

Attributes

value

value=double

TODO

continuous

→ scenario → interventions → continuous

<continuous>
IN THIS ORDER:
| ( <vaccine ... /> )*
| ( <ITN ... /> )*
| ( <ipti ... /> )*
</continuous>

• vaccine
• ITN
• ipti

vaccine

→ scenario → interventions → continuous → vaccine

<vaccine
    targetAgeYrs=double
    coverage=double
  />

Documentation (element)

Units: List of elements

List of age groups for vaccination

Attributes

targetAgeYrs

targetAgeYrs=double

Units: Years Min: 0 Max: 100

Target age of intervention

coverage

coverage=double

Units: Proportion Min: 0 Max: 1

Coverage of intervention

ITN

→ scenario → interventions → continuous → ITN

<ITN
    targetAgeYrs=double
    coverage=double
  />

Documentation (element)

Units: List of elements

Description of ITN deployment in the community

Attributes

targetAgeYrs

targetAgeYrs=double

Units: Years Min: 0 Max: 100

Target age of intervention

coverage

coverage=double

Units: Proportion Min: 0 Max: 1

Coverage of intervention

ipti

→ scenario → interventions → continuous → ipti

<ipti
    targetAgeYrs=double
    coverage=double
  />

Documentation (element)

Units: List of elements

List of age groups for IPTi distribution

Attributes

targetAgeYrs

targetAgeYrs=double

Units: Years Min: 0 Max: 100

Target age of intervention

coverage

coverage=double

Units: Proportion Min: 0 Max: 1

Coverage of intervention

timed

→ scenario → interventions → timed

<timed>
IN THIS ORDER:
| ( <intervention ... /> )+
</timed>

• intervention

Documentation (element)

Units: List of elements

List of timed interventions

Documentation (type)

Units: List of elements

List of timed interventions

intervention

→ scenario → interventions → timed → intervention

<intervention
    time=int
  >
IN THIS ORDER:
| [ <changeHS ... /> ]
| [ <changeEIR ... /> ]
| [ <MDA ... /> ]
| [ <IRS ... /> ]
| [ <vaccinate ... /> ]
| [ <ITN ... /> ]
| [ <ipti ... /> ]
</intervention>

• changeHS
• changeEIR
• MDA
• IRS
• vaccinate
• ITN
• ipti

Attributes

time

time=int

Units: Number Min: 1 Max: 10000

Time step of intervention

changeHS

→ scenario → interventions → timed → intervention → changeHS

<changeHS
    name=string
    healthSystemMemory=int
  >
IN THIS ORDER:
|   <drugRegimen ... /> 
|   <initialACR ... /> 
|   <compliance ... /> 
|   <nonCompliersEffective ... /> 
|   <pSeekOfficialCareUncomplicated1 ... /> 
|   <pSelfTreatUncomplicated ... /> 
|   <pSeekOfficialCareUncomplicated2 ... /> 
|   <pSeekOfficialCareSevere ... /> 
|   <pSequelaeInpatient ... /> 
|   <CFR ... /> 
</changeHS>

• drugRegimen
• initialACR
• compliance
• nonCompliersEffective
• pSeekOfficialCareUncomplicated1
• pSelfTreatUncomplicated
• pSeekOfficialCareUncomplicated2
• pSeekOfficialCareSevere
• pSequelaeInpatient
• CFR

Documentation (type)

Units: List of elements

Description of health system

Attributes

name

name=string

Units: string

Name of health system

healthSystemMemory

healthSystemMemory=int

Units: Time steps Min: 1 Max: 100

Follow-up period during which a recurrence is considered to be a treatment failure

drugRegimen

→ scenario → healthSystem → drugRegimen

<drugRegimen
    firstLine=string
    secondLine=string
    inpatient=string
  />

Documentation (element)

Units: List of elements

Description of drug regimen

Attributes

firstLine

firstLine=string

Units: Drug code

Code for first line drug

secondLine

secondLine=string

Units: Drug code

Code for second line drug

inpatient

inpatient=string

Units: Drug code

Code for drug used for treating inpatients

initialACR

→ scenario → healthSystem → initialACR

<initialACR>
IN THIS ORDER:
| [ <CQ ... /> ]
| [ <SP ... /> ]
| [ <AQ ... /> ]
| [ <SPAQ ... /> ]
| [ <ACT ... /> ]
| [ <QN ... /> ]
|   <selfTreatment ... /> 
</initialACR>

• CQ
• SP
• AQ
• SPAQ
• ACT
• QN
• selfTreatment

Documentation (element)

Units: Proportion Min: 0 Max: 1

Initial cure rate

CQ

→ scenario → healthSystem → initialACR → CQ

<CQ
    value=double
  />

Documentation (element)

Units: List of elements

Chloroquine

Attributes

value

value=double

TODO

SP

→ scenario → healthSystem → initialACR → SP

<SP
    value=double
  />

Documentation (element)

Units: List of elements

Sulphadoxine-pyrimethamine

Attributes

value

value=double

TODO

AQ

→ scenario → healthSystem → initialACR → AQ

<AQ
    value=double
  />

Documentation (element)

Units: List of elements

Amodiaquine

Attributes

value

value=double

TODO

SPAQ

→ scenario → healthSystem → initialACR → SPAQ

<SPAQ
    value=double
  />

Documentation (element)

Units: List of elements

Sulphadoxine-pyrimethamine/Amodiaquine

Attributes

value

value=double

TODO

ACT

→ scenario → healthSystem → initialACR → ACT

<ACT
    value=double
  />

Documentation (element)

Units: List of elements

Artemisinine combination therapy

Attributes

value

value=double

TODO

QN

→ scenario → healthSystem → initialACR → QN

<QN
    value=double
  />

Documentation (element)

Units: List of elements

Quinine

Attributes

value

value=double

TODO

selfTreatment

→ scenario → healthSystem → initialACR → selfTreatment

<selfTreatment
    value=double
  />

Documentation (element)

Units: Proportion Min: 0 Max: 1

Probability of self-treatment

Attributes

value

value=double

TODO

compliance

→ scenario → healthSystem → compliance

<compliance>
IN THIS ORDER:
| [ <CQ ... /> ]
| [ <SP ... /> ]
| [ <AQ ... /> ]
| [ <SPAQ ... /> ]
| [ <ACT ... /> ]
| [ <QN ... /> ]
|   <selfTreatment ... /> 
</compliance>

• CQ
• SP
• AQ
• SPAQ
• ACT
• QN
• selfTreatment

Documentation (element)

Units: Proportion Min: 0 Max: 1

Adherence to treatment

nonCompliersEffective

→ scenario → healthSystem → nonCompliersEffective

<nonCompliersEffective>
IN THIS ORDER:
| [ <CQ ... /> ]
| [ <SP ... /> ]
| [ <AQ ... /> ]
| [ <SPAQ ... /> ]
| [ <ACT ... /> ]
| [ <QN ... /> ]
|   <selfTreatment ... /> 
</nonCompliersEffective>

• CQ
• SP
• AQ
• SPAQ
• ACT
• QN
• selfTreatment

Documentation (element)

Units: Proportion Min: 0 Max: 1

Effectiveness of treatment of non compliers

pSeekOfficialCareUncomplicated1

→ scenario → healthSystem → pSeekOfficialCareUncomplicated1

<pSeekOfficialCareUncomplicated1
    value=double
  />

Documentation (element)

Units: Proportion Min: 0 Max: 1

Probability that a patient with newly incident uncomplicated disease seeks official care

Attributes

value

value=double

TODO

pSelfTreatUncomplicated

→ scenario → healthSystem → pSelfTreatUncomplicated

<pSelfTreatUncomplicated
    value=double
  />

Documentation (element)

Units: Proportion Min: 0 Max: 1

Probability that a patient with uncomplicated disease self-treats

Attributes

value

value=double

TODO

pSeekOfficialCareUncomplicated2

→ scenario → healthSystem → pSeekOfficialCareUncomplicated2

<pSeekOfficialCareUncomplicated2
    value=double
  />

Documentation (element)

Units: Proportion Min: 0 Max: 1

Probability that a patient with recurrence of uncomplicated disease seeks official care

Attributes

value

value=double

TODO

pSeekOfficialCareSevere

→ scenario → healthSystem → pSeekOfficialCareSevere

<pSeekOfficialCareSevere
    value=double
  />

Documentation (element)

Units: Proportion Min: 0 Max: 1

Probability that a patient with severe disease seeks official care

Attributes

value

value=double

TODO

pSequelaeInpatient

→ scenario → healthSystem → pSequelaeInpatient

<pSequelaeInpatient>
IN THIS ORDER:
| ( <item ... /> )+
</pSequelaeInpatient>

• item

Documentation (element)

Units: List of elements

List of age specific probabilities of sequelae in inpatients

item

→ scenario → healthSystem → pSequelaeInpatient → item

<item
    value=double
    maxAgeYrs=double
  />

Attributes

value

value=double

TODO

maxAgeYrs

maxAgeYrs=double

Units: Years Min: 0 Max: 100

Upper bound of age group

CFR

→ scenario → healthSystem → CFR

<CFR>
IN THIS ORDER:
| ( <group ... /> )+
</CFR>

• group

group

→ scenario → healthSystem → CFR → group

<group
    cfr=double
    lowerbound=double
  />

Attributes

cfr

cfr=double

Units: Proportion Min: 0 Max: 1

Case fatality rate

lowerbound

lowerbound=double

Units: Years Min: 0 Max: 100

Lower bound of age group

changeEIR

→ scenario → interventions → timed → intervention → changeEIR

<changeEIR
    name=string
    inputType=("EIR" or "Fourier")
  >
IN THIS ORDER:
| EXACTLY ONE OF:
| | ( <EIRDaily ... /> )+
| | ( <anopheles ... /> )+
</changeEIR>

• EIRDaily
• anopheles

Documentation (type)

Units: List of elements

Data for entomodel: TODO: choice element

Attributes

name

name=string

Units: string

Name of entomology data

inputType

inputType=("EIR" or "Fourier")

EIRDaily

→ scenario → entoData → EIRDaily

<EIRDaily
  [ origin=string ]
  >
    double
</EIRDaily>

Documentation (type)

Units: Number Min: 0

Value of daily EIR

Attributes

origin

origin=string

anopheles

→ scenario → entoData → anopheles

<anopheles
    mosquito=string
    useNv0Guess=boolean
  >
IN THIS ORDER:
|   <eir ... /> 
|   <mosq ... /> 
</anopheles>

• eir
• mosq

Attributes

mosquito

mosquito=string

useNv0Guess

useNv0Guess=boolean

eir

→ scenario → entoData → anopheles → eir

<eir
    a0=double
    a1=double
    a2=double
    b1=double
    b2=double
    EIRRotateAngle=double
  />

Documentation (element)

Units: Element

Description of entomological inoculation rate

Attributes

a0

a0=double

a1

a1=double

a2

a2=double

b1

b1=double

b2

b2=double

EIRRotateAngle

EIRRotateAngle=double

mosq

→ scenario → entoData → anopheles → mosq

<mosq
    mosqRestDuration=int
    mosqSeekingDeathRate=double
    mosqSeekingDuration=double
    mosqProbBiting=double
    mosqProbFindRestSite=double
    mosqProbResting=double
    mosqProbOvipositing=double
  />

Documentation (element)

Units: List of elements

Vector species

Attributes

mosqRestDuration

mosqRestDuration=int

mosqSeekingDeathRate

mosqSeekingDeathRate=double

mosqSeekingDuration

mosqSeekingDuration=double

mosqProbBiting

mosqProbBiting=double

mosqProbFindRestSite

mosqProbFindRestSite=double

mosqProbResting

mosqProbResting=double

mosqProbOvipositing

mosqProbOvipositing=double

MDA

→ scenario → interventions → timed → intervention → MDA

<MDA
    maxAge=double
    minAge=double
    coverage=double
  />

Documentation (element)

Units: List of elements

Description of mass drug deployment in the community

Attributes

maxAge

maxAge=double

Units: Years Min: 0 Max: 100

Maximum age of eligible individuals

minAge

minAge=double

Units: Years Min: 0 Max: 100

Minimum age of eligible individuals

coverage

coverage=double

Units: Proportion Min: 0 Max: 1

Coverage of intervention

IRS

→ scenario → interventions → timed → intervention → IRS

<IRS/>

vaccinate

→ scenario → interventions → timed → intervention → vaccinate

<vaccinate
    maxAge=double
    minAge=double
    coverage=double
  />

Documentation (element)

Units: List of elements

Description of vaccine deployment in the community

Attributes

maxAge

maxAge=double

Units: Years Min: 0 Max: 100

Maximum age of eligible individuals

minAge

minAge=double

Units: Years Min: 0 Max: 100

Minimum age of eligible individuals

coverage

coverage=double

Units: Proportion Min: 0 Max: 1

Coverage of intervention

ITN

→ scenario → interventions → timed → intervention → ITN

<ITN
    maxAge=double
    minAge=double
    coverage=double
  />

Documentation (element)

Units: List of elements

Description of ITN deployment in the community

Attributes

maxAge

maxAge=double

Units: Years Min: 0 Max: 100

Maximum age of eligible individuals

minAge

minAge=double

Units: Years Min: 0 Max: 100

Minimum age of eligible individuals

coverage

coverage=double

Units: Proportion Min: 0 Max: 1

Coverage of intervention

ipti

→ scenario → interventions → timed → intervention → ipti

<ipti
    maxAge=double
    minAge=double
    coverage=double
  />

Documentation (element)

Units: List of elements

List of age groups for IPTi distribution

Attributes

maxAge

maxAge=double

Units: Years Min: 0 Max: 100

Maximum age of eligible individuals

minAge

minAge=double

Units: Years Min: 0 Max: 100

Minimum age of eligible individuals

coverage

coverage=double

Units: Proportion Min: 0 Max: 1

Coverage of intervention

caseManagements

→ scenario → caseManagements

<caseManagements
    name=string
  >
IN THIS ORDER:
| ( <caseManagement ... /> )+
</caseManagements>

• caseManagement

Documentation (element)

Units: List of elements

List of case managment interventions

Documentation (type)

Units: List of elements

List of age-specific case managment descriptions

Attributes

name

name=string

Units: string

Name of age specific intervention

caseManagement

→ scenario → caseManagements → caseManagement

<caseManagement
  [ minAgeYrs=decimal ]
    maxAgeYrs=decimal
  >
IN THIS ORDER:
|   <uc1 ... /> 
|   <uc2 ... /> 
|   <sev ... /> 
|   <nmf ... /> 
|   <decisions ... /> 
</caseManagement>

• uc1
• uc2
• sev
• nmf
• decisions

Documentation (element)

Units: List of elements

Age-specific case management description, describes entry-points and decisions, with entry-point-specific decision probabilities

Attributes

minAgeYrs

minAgeYrs=decimal

maxAgeYrs

maxAgeYrs=decimal

Units: Years Min: 0 Max: 100

Upper bound of age group

uc1

→ scenario → caseManagements → caseManagement → uc1

<uc1>
IN THIS ORDER:
| ( <endPoint ... /> )+
</uc1>

• endPoint

endPoint

→ scenario → caseManagements → caseManagement → uc1 → endPoint

<endPoint
    decision=int
    p=double
  />

Attributes

decision

decision=int

Foreign key reference to outcome node

p

p=double

Units: Proportion Min: 0 Max: 1

Probability of outcome

uc2

→ scenario → caseManagements → caseManagement → uc2

<uc2>
IN THIS ORDER:
| ( <endPoint ... /> )+
</uc2>

• endPoint

sev

→ scenario → caseManagements → caseManagement → sev

<sev>
IN THIS ORDER:
| ( <endPoint ... /> )+
</sev>

• endPoint

nmf

→ scenario → caseManagements → caseManagement → nmf

<nmf>
IN THIS ORDER:
| ( <endPoint ... /> )+
</nmf>

• endPoint

decisions

→ scenario → caseManagements → caseManagement → decisions

<decisions>
IN THIS ORDER:
| ( <decision ... /> )+
</decisions>

• decision

decision

→ scenario → caseManagements → caseManagement → decisions → decision

<decision
    id=int
  >
IN THIS ORDER:
| ( <medicate ... /> )+
</decision>

• medicate

Documentation (element)

Units: List of elements

describes treatment decisions, a list of medicate descisions.

Attributes

id

id=int

Units: Number

Key of decision

medicate

→ scenario → caseManagements → caseManagement → decisions → decision → medicate

<medicate
    name=string
    qty=int
    time=int
  />

Attributes

name

name=string

Units: string

Name of drug compound

qty

qty=int

Units: Number

Quantity of drug compound

time

time=int

Units: Number Min: 1 Max: 10000

Time step of intervention

healthSystem

→ scenario → healthSystem

<healthSystem
    name=string
    healthSystemMemory=int
  >
IN THIS ORDER:
|   <drugRegimen ... /> 
|   <initialACR ... /> 
|   <compliance ... /> 
|   <nonCompliersEffective ... /> 
|   <pSeekOfficialCareUncomplicated1 ... /> 
|   <pSelfTreatUncomplicated ... /> 
|   <pSeekOfficialCareUncomplicated2 ... /> 
|   <pSeekOfficialCareSevere ... /> 
|   <pSequelaeInpatient ... /> 
|   <CFR ... /> 
</healthSystem>

• drugRegimen
• initialACR
• compliance
• nonCompliersEffective
• pSeekOfficialCareUncomplicated1
• pSelfTreatUncomplicated
• pSeekOfficialCareUncomplicated2
• pSeekOfficialCareSevere
• pSequelaeInpatient
• CFR

Documentation (element)

Units: List of elements

Description of health system

Documentation (type)

Units: List of elements

Description of health system

Attributes

name

name=string

Units: string

Name of health system

healthSystemMemory

healthSystemMemory=int

Units: Time steps Min: 1 Max: 100

Follow-up period during which a recurrence is considered to be a treatment failure

entoData

→ scenario → entoData

<entoData
    name=string
    inputType=("EIR" or "Fourier")
  >
IN THIS ORDER:
| EXACTLY ONE OF:
| | ( <EIRDaily ... /> )+
| | ( <anopheles ... /> )+
</entoData>

• EIRDaily
• anopheles

Documentation (element)

Units: List of elements

Description of entomological data

Documentation (type)

Units: List of elements

Data for entomodel: TODO: choice element

Attributes

name

name=string

Units: string

Name of entomology data

inputType

inputType=("EIR" or "Fourier")

parameters

→ scenario → parameters

<parameters
    interval=int
    iseed=int
    delta=double
    eipDuration=int
    latentp=int
  >
IN THIS ORDER:
| ( <parameter ... /> )+
</parameters>

• parameter

Documentation (element)

Parameters for mathematical model

Documentation (type)

Units: List of elements

Parameter vector

Attributes

interval

interval=int

Units: Days

Simulation step

iseed

iseed=int

Units: Number

Seed for RNG

delta

delta=double

Units: ? Redundant

this no longer seems to be used

eipDuration

eipDuration=int

Units: Count Min: 0 Max: 50

The duration of sporogony in days

latentp

latentp=int

Units: Time steps Min: 0 Max: 20

pre-erythrocytic latent period, in time steps

parameter

→ scenario → parameters → parameter

<parameter
    name=string
    number=int
    value=double
  [ include=boolean ]
  />

Attributes

name

name=string

Units: string

Name of parameter

number

number=int

Units: Number Min: 1 Max: 100

Reference number of input parameter

value

value=double

Units: Number Min: 0

Parameter value

include

include=boolean

Units: Number Min: 0 Max: 1

True if parameter is to be sampled in optimization runs. Not used in simulator app.