Package index • AnophelesBionomics

All functions

adding_data_extern(): Add External Data to a Repository with Validation

augment_withProportion_modif(): Add Aggregated Numerator and Denominator Columns Based on Selected Variables

augment_with_taxonomy(): Augment Dataset with Species-Complex Taxonomic Harmonization

Bionomics_For_AnopholesModel(): Estimate Species-Specific Bionomic Traits for Anopheles Using a Hierarchical Bayesian Framework

create_datareq(): Filter and Prepare Dataset for Proportion-Based Analysis

create_repo(): Create and Load the Combined Repository Dataset

creation_df(): Prepare Clean and Taxonomically Harmonized Dataset for Bayesian Modeling

extract_HPD_mcmc(): Extract High Posterior Density (HPD) Samples from MCMC Output

filter_bz_studies(): Filter Studies Based on Barnabas Zogo Criteria

launch_density_app(): Launch Interactive Density Explorer for Stan Model

multi_species_pie(): Generate Multi-Species Pie Charts

obs_complex_species_pie(): Generate a Pie Chart of Observations by Species or Complex

obs_region_pie(): Generate a Pie Chart of Observations by Region

plot_density(): Generate Posterior Density Plots by Species Complex

plot_lollipop(): Generate Lollipop Plots by Complex

prepare_data_density(): Format MCMC Samples for Visualization

prepare_stan_data(): Format Species-Level Data for Hierarchical Stan Model

read_data_file(): Read a CSV File from the Package's Internal Data Directory

region_period_filter(): Filter Dataset by Geographic Region and Time Period

required_cols(): Ensure Required Columns Are Present in a Data Frame

run_stan(): Run Hierarchical Bayesian Model with rstan

set_var_params(): Set Parameters and Transform Data for a Given Variable

species_complex_result(): Extract Summary Statistics from Stan Model Results