All functions

AnophelesModel-package

The main usages of AnophelesModel

AnophelesModel()

main function of the AnophelesModel package

activity_patterns

Human and mosquito behavioural patterns

build_model_obj()

incorporate vector, host and activity parameters in the entomological model, initialize and build a model object

calculate_impact()

calculate intervention impact in terms of vectorial capacity reduction

calculate_impact_ip()

calculates reduction in vectorial capacity for one interpolation point

calculate_impact_var()

calculate intervention impact on the vectorial capacity and assess its variation accounting for the variation of input parameters

def_activity_patterns()

defines the activity patterns of vectors and hosts

def_host_params()

define host-specific entomological parameters

def_interventions_effects()

define the effects of interventions

def_vector_params()

define the vector-specific entomological parameters

get_OM_GVI_snippet()

creates an xml snippet to be included in an OpenMalaria scenario for the GVI intervention

get_OM_ento_snippet()

creates an xml snippet to be included in an OpenMalaria scenario

get_exposure_multiplier()

calculate adjustment for averted exposure

get_in_out_exp()

Calculate human exposure to biting

get_net_decay()

Get LLIN survival and holed area

get_net_insecticides()

Get net insecticide types

get_net_types()

Get net types

host_ent_param

Host-specific estimated parameters for the entomological model of malaria transmission

intervention_obj_examples

Example of interventions

interventions_param

General description of IRS and LLINs interventions parameterizations

list_activity()

Extract activity patterns of humans or mosquitoes

list_all_species()

Print all the species whose entomological parameters are provided in the package database.

list_available_interventions()

Print all the interventions available in the package

list_intervention_models()

Print all the interventions parameterisations available in the package

plot_impact_species()

produce various impact figures per species

plot_impact_var()

produce various impact figures per species

vec_ent_param

Vector-specific estimated entomological parameters